JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC75A_chr17_16436577_16497193	0/0	t0017	2214	1	0	0	1	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0018	2215	1	1	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0019	2213	1	1	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0020	2214	1	1	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0021	2214	1	0	1	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0022	2214	1	1	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0023	2214	1	0	0	0	0	1	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0024	2215	1	0	1	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	1/0	t0025	2215	1	0	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0026	2214	1	0	0	1	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	t0027	2214	1	0	1	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75B_chr22_24580635_24598073	1/1	t0001	286	461	96	80	220	18	45	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	t0002	286	1	0	0	0	0	1	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC7_chr1_69562922_70149364	0/0	t0001	23192	5	1	0	2	0	2	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0002	23188	3	2	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0003	23185	2	2	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0004	23187	2	0	1	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0005	23188	2	0	2	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0006	23189	2	0	0	1	1	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0007	23192	2	0	1	0	1	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0008	23193	2	1	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0009	23193	2	2	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0010	23188	2	2	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0011	23189	2	2	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0012	23192	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0013	23193	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0014	23187	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0015	23188	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0016	23189	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0017	23193	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0018	23180	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0019	23175	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0020	23195	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0021	23187	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0022	23185	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0023	23187	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0024	23188	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0025	23187	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0026	23184	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0027	23183	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0028	23195	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0029	23189	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0030	23189	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0031	23190	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0032	23192	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0033	23192	1	0	0	0	1	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0034	23192	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0035	23193	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0036	23193	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0037	23193	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364