JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC7_chr1_69562922_70149364	0/0	t0038	23194	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0039	23194	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	1/0	t0040	23196	1	0	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0041	23189	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0042	23188	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0043	23190	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0044	23188	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0045	23194	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0046	23192	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0047	23189	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0048	23190	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0049	23189	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0050	23188	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0051	23189	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0052	23189	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0053	23189	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0054	23190	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0055	23191	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0056	23188	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0057	23187	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0058	23187	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0059	23189	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0060	23186	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0061	23189	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0062	23188	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0063	23180	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0064	23180	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0065	23186	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0066	23180	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0067	23190	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0068	23183	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0069	23190	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0070	23192	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0071	23192	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0072	23192	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0073	23193	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0074	23188	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0075	23189	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0076	23188	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0077	23189	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0078	23187	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0079	23187	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0080	23187	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0081	23189	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0082	23189	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0083	23190	1	0	0	0	1	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/1	t0084	23187	1	0	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0085	23188	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0086	23191	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0087	23193	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364