JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC7_chr1_69562922_70149364	0/0	t0088	23191	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0089	23187	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0090	23193	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0091	23194	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0092	23192	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	t0093	23188	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC8A_chr9_128877133_128923039	0/0	t0001	1904	129	50	17	47	1	14	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/1	t0002	1902	126	6	27	61	13	18	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0003	1902	19	0	1	14	0	4	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0004	1902	13	0	0	11	0	2	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0005	1902	12	8	1	3	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0006	1902	9	8	1	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0007	1903	5	5	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0008	1902	5	3	2	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0009	1905	4	0	4	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0010	1902	3	2	1	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	1/0	t0011	1902	2	1	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0012	1902	2	1	0	0	1	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0013	1903	2	2	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0014	1904	1	1	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0015	1904	1	1	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0016	1902	1	1	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0017	1902	1	0	0	0	1	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0018	1902	1	0	1	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0019	1902	1	0	0	0	0	1	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0020	1904	1	0	1	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0021	1902	1	1	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0022	1902	1	0	0	1	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0023	1902	1	0	0	0	0	1	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0024	1902	1	0	1	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0025	1903	1	0	0	1	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	t0026	1902	1	0	1	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8B_chr1_89519829_89602861	0/0	t0001	5253	77	23	20	24	2	8	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0002	5252	68	10	9	40	2	7	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0003	5252	66	4	10	38	2	12	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/1	t0004	5253	27	3	7	7	4	5	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0005	5253	9	4	1	2	1	1	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0006	5252	7	7	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0007	5252	7	7	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0008	5254	5	0	0	4	0	1	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0009	5253	5	5	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0010	5252	4	4	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0011	5252	4	4	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0012	5254	3	3	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0013	5252	3	0	1	0	1	1	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0014	5254	2	0	1	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	1/0	t0015	5253	2	0	1	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0016	5205	2	2	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0017	5253	2	1	1	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0018	5253	2	0	1	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861