JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC8B_chr1_89519829_89602861	0/0	t0019	5252	2	2	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0020	5252	2	0	0	0	0	2	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0021	5252	2	0	0	0	0	2	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0022	5253	2	2	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0023	5252	1	0	0	0	0	1	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0024	5253	1	1	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0025	5252	1	0	0	0	1	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0026	5253	1	1	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0027	5253	1	0	1	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0028	5253	1	0	1	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0029	5253	1	1	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0030	5253	1	0	0	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0031	5253	1	1	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0032	5252	1	1	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0033	5252	1	0	0	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0034	5252	1	1	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0035	5252	1	0	0	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0036	5252	1	0	1	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0037	5252	1	0	1	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0038	5252	1	1	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0039	5252	1	1	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0040	5253	1	1	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0041	5253	1	0	0	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0042	5252	1	0	0	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	t0043	5253	1	0	0	0	1	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8C_chr1_89628120_89724533	0/0	t0001	4759	72	16	17	33	2	4	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	1/1	t0002	4759	64	12	10	26	3	11	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0003	4759	60	14	12	27	2	5	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0004	4759	7	1	2	2	0	2	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0005	4759	6	0	0	6	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0006	4759	5	5	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0007	4759	5	3	2	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0008	4759	5	5	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0009	4759	4	4	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0010	4759	4	4	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0011	4759	3	3	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0012	4759	2	2	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0013	4759	2	2	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0014	4759	2	2	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0015	4759	1	0	0	0	0	1	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0016	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0017	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0018	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0019	4759	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0020	4759	1	0	1	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0021	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0022	4759	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0023	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0024	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0025	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533