JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC8C_chr1_89628120_89724533	0/0	t0026	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0027	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0028	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0029	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0030	4759	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0031	4759	1	0	0	0	0	1	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0032	4759	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0033	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0034	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0035	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0036	4759	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0037	4759	1	0	0	0	1	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0038	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0039	4759	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0040	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	t0041	4759	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8D_chr1_89816032_89941611	0/1	t0001	1368	136	39	30	37	6	23	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0002	1368	26	24	2	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0003	1368	21	0	3	14	0	4	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0004	1367	7	4	0	1	0	2	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0005	1368	7	1	5	0	0	1	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0006	1368	4	4	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	1/0	t0007	1374	3	0	2	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0008	1368	2	0	2	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0009	1368	1	1	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0010	1368	1	1	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0011	1368	1	1	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	t0012	1374	1	1	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8E_chr19_7883510_7907016	0/0	t0001	1201	90	4	16	49	5	16	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0002	1197	75	1	12	46	2	14	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	1/0	t0003	1200	74	44	4	18	1	6	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0004	1202	35	4	13	14	0	4	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0005	1201	29	8	3	13	4	1	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0006	1196	19	3	0	16	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0007	1201	16	2	11	0	3	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0008	1202	9	0	5	0	2	2	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0009	1201	6	3	1	2	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0010	1199	5	5	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0011	1199	5	3	0	2	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0012	1202	5	0	2	3	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0013	1200	3	3	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0014	1197	2	0	0	0	0	2	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0015	1200	2	2	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0016	1200	2	2	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0017	1203	2	2	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/1	t0018	1201	1	0	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0019	1200	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0020	1197	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0021	1200	1	1	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0022	1201	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016