Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOL6_chr22_35643446_35673404	0/0	t0053	9034	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0054	9034	1	0	0	0	0	1	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0055	9035	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0056	9036	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0057	9032	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0058	9034	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0059	9032	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0060	9034	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0061	9034	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0062	9034	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0063	9034	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0064	9034	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0065	9034	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0066	9034	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0067	9034	1	0	0	0	0	1	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0068	9034	1	0	0	0	0	1	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0069	9034	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0070	9034	1	0	1	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0071	9034	1	0	0	0	0	1	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0072	9034	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0073	9034	1	0	1	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0074	9034	1	0	0	0	1	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	1/0	t0075	9034	1	0	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0076	9023	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0077	9033	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0078	9034	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0079	9034	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0080	9034	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0081	9035	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	t0082	9033	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOLD1_chr12_12780659_12796466	0/1	t0001	3843	117	21	19	65	2	9	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0002	3850	80	2	16	44	2	16	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0003	3846	54	5	3	35	2	9	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	1/0	t0004	3848	54	10	13	24	3	3	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0005	3846	16	0	7	8	1	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0006	3850	9	0	0	9	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0007	3843	8	8	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0008	3845	6	6	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0009	3846	6	6	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0010	3846	5	5	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0011	3846	5	5	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0012	3846	5	0	2	0	2	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0013	3846	4	3	1	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0014	3848	4	4	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0015	3846	3	3	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0016	3848	3	0	0	3	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0017	3843	2	0	1	0	1	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0018	3848	2	2	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0019	3846	2	0	0	2	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0020	3843	2	0	0	0	2	0	copy fasta	APOLD1	chr12	12780659	12796466