JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC8E_chr19_7883510_7907016	0/0	t0023	1195	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0024	1201	1	0	0	0	1	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0025	1202	1	1	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0026	1203	1	0	0	0	0	1	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0027	1203	1	0	1	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	t0028	1201	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC9_chr14_59915144_60071817	0/1	t0001	3941	52	17	3	27	1	3	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0002	3618	44	9	12	14	0	9	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0003	3942	35	3	16	9	5	2	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0004	3618	29	4	1	24	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0005	3617	24	0	0	24	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0006	3943	12	1	4	3	1	3	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0007	3618	11	0	0	11	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0008	3941	11	1	5	0	3	2	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0009	3619	10	0	3	4	1	2	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0010	3941	9	0	1	8	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0011	3929	8	4	0	4	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0012	3618	8	8	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0013	3618	7	4	1	0	0	2	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0014	3943	7	1	2	3	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0015	3942	6	0	0	5	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0016	3940	4	0	2	2	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0017	3618	4	3	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0018	3618	3	3	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0019	3942	3	1	0	1	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0020	3617	3	0	0	3	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0021	3619	2	2	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0022	3619	2	0	0	2	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0023	3930	2	0	0	2	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	1/0	t0024	3619	2	1	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0025	3619	2	1	0	0	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0026	3618	2	0	0	2	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0027	3940	2	0	0	2	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0028	3941	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0029	3618	1	1	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0030	3942	1	0	0	0	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0031	3941	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0032	3941	1	0	0	0	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0033	3941	1	1	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0034	3944	1	0	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0035	3619	1	0	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0036	3943	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0037	3942	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0038	3618	1	1	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0039	3943	1	0	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0040	3942	1	0	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0041	3941	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0042	3942	1	0	0	0	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0043	3942	1	0	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	t0044	3940	1	0	0	0	1	0	copy fasta	LRRC9	chr14	59915144	60071817