JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC9_chr14_59915144_60071817	0/0	t0045	3941	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRCC1_chr8_85102238_85151080	0/1	t0001	624	174	59	27	62	4	21	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	1/0	t0002	628	133	24	20	68	3	17	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	t0003	628	6	1	4	0	1	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	t0004	624	5	4	1	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	t0005	625	4	4	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	t0006	628	4	0	0	4	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRD1_chr7_92139842_92184142	1/1	t0001	257	360	92	58	176	6	26	copy fasta	LRRD1	chr7	92139842	92184142
LRRFIP1_chr2_237622587_237786643	0/0	t0001	2170	57	17	9	16	4	11	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/1	t0002	2170	53	20	10	15	2	5	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0003	2170	29	3	2	18	0	6	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0004	2170	25	2	5	12	2	4	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0005	2170	14	4	1	6	0	3	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0006	2170	12	1	1	7	2	1	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0007	2170	10	0	1	9	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0008	2170	8	6	2	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0009	2170	6	0	1	5	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0010	2170	5	0	2	2	0	1	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0011	2171	4	4	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0012	2169	4	3	1	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0013	2171	4	2	2	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0014	2170	3	0	0	3	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0015	2170	3	3	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0016	2170	3	0	0	2	0	1	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0017	2170	2	2	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0018	2169	2	2	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0019	2170	2	0	0	1	0	1	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0020	2169	2	2	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0021	2170	2	0	0	2	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0022	2170	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0023	2171	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0024	2170	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	1/0	t0025	2170	1	0	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0026	2169	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0027	2170	1	0	0	1	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0028	2171	1	0	0	0	0	1	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0029	2170	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0030	2171	1	0	1	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0031	2171	1	0	0	1	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0032	2169	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0033	2170	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0034	2170	1	0	1	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0035	2170	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0036	2170	1	0	0	1	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0037	2170	1	0	0	1	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0038	2171	1	0	0	0	0	1	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0039	2170	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0040	2171	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0041	2170	1	0	1	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0042	2169	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643