JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRFIP1_chr2_237622587_237786643	0/0	t0043	2170	1	0	0	1	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0044	2170	1	0	0	1	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0045	2170	1	0	0	1	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0046	2171	1	0	0	0	0	1	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	t0047	2171	1	0	0	1	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP2_chr3_37047626_37179582	1/0	t0001	1325	124	21	22	53	7	20	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	t0002	1325	73	13	22	25	3	10	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/1	t0003	1325	48	30	10	5	0	2	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	t0004	1325	10	10	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	t0005	1325	8	6	2	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	t0006	1325	2	0	0	2	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	t0007	1325	2	0	0	2	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	t0008	1325	1	0	0	1	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRIQ1_chr12_85031351_85250105	1/1	t0001	246	194	66	42	58	12	14	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	t0002	246	32	4	0	26	0	2	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	t0003	246	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	t0004	246	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ3_chr1_74021015_74203176	0/0	t0001	980	105	15	36	38	5	11	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/1	t0002	980	91	16	17	40	5	12	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	1/0	t0003	980	48	25	6	7	2	7	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0004	980	13	12	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0005	980	5	4	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0006	980	3	3	0	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0007	980	2	1	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0008	980	2	2	0	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0009	980	1	0	0	1	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0010	980	1	0	0	0	0	1	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0011	980	1	1	0	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0012	980	1	0	0	0	0	1	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	t0013	980	1	1	0	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ4_chr3_169807870_169842773	1/1	t0001	351	367	84	58	178	11	34	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	t0002	351	7	0	4	0	3	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	t0003	351	6	5	1	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	t0004	351	5	4	1	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	t0005	351	1	1	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRK1_chr15_100914357_101083257	0/0	t0001	9627	12	1	2	3	0	6	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0002	9628	9	0	1	8	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0003	9630	6	0	2	3	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0004	9628	5	0	2	3	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0005	9631	5	1	3	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0006	9628	4	1	0	3	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0007	9628	4	0	0	4	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0008	9629	4	0	0	4	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0009	9628	3	3	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0010	9628	3	0	0	3	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0011	9630	3	0	3	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0012	9631	3	0	0	0	0	3	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0013	9631	3	0	0	3	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0014	9627	3	0	3	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0015	9627	2	0	0	0	1	1	copy fasta	LRRK1	chr15	100914357	101083257