JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRK1_chr15_100914357_101083257	0/0	t0066	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0067	9627	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0068	9628	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0069	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0070	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0071	9628	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0072	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0073	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0074	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0075	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0076	9628	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0077	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0078	9628	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0079	9628	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0080	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0081	9628	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0082	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0083	9629	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0084	9629	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0085	9629	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0086	9629	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0087	9630	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0088	9630	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0089	9629	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0090	9629	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0091	9629	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0092	9629	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0093	9629	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0094	9629	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0095	9628	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0096	9628	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0097	9628	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0098	9629	1	0	0	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0099	9629	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0100	9628	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0101	9628	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0102	9628	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0103	9630	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0104	9630	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0105	9630	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0106	9630	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0107	9630	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0108	9630	1	0	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0109	9630	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/1	t0110	9630	1	0	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0111	9630	1	0	0	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0112	9630	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0113	9630	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0114	9630	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0115	9630	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257