JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
LRRK1_chr15_100914357_101083257	0/0	t0216	9628	1	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0217	9628	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0218	9628	1	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0219	9628	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0220	9630	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0221	9624	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0222	9629	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0223	9625	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0224	9625	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0225	9619	1	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0226	9628	1	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0227	9619	1	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0228	9628	1	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0229	9630	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0230	9627	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0231	9617	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0232	9617	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0233	9628	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0234	9628	1	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0235	9628	1	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0236	9630	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0237	9628	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0238	9629	1	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0239	9629	1	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0240	9629	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0241	9629	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0242	9630	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0243	9630	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0244	9630	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0245	9627	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0246	9628	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0247	9625	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0248	9627	1	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0249	9627	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0250	9630	1	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0251	9630	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0252	9620	1	0	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0253	9621	1	0	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0254	9620	1	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0255	9618	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0256	9621	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0257	9627	1	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0258	9626	1	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0259	9631	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0260	9631	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0261	9634	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0262	9628	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0263	9628	1	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0264	9619	1	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0265	9628	1	0	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257