JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRK1_chr15_100914357_101083257	0/0	t0266	9630	1	0	0	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0267	9630	1	0	0	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	t0268	9627	1	0	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK2_chr12_40219997_40374285	0/0	t0001	1656	138	23	29	65	9	12	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	1/0	t0002	1656	94	21	12	56	0	4	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/1	t0003	1659	56	7	13	29	1	5	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0004	1655	26	11	4	0	2	9	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0005	1656	26	0	8	14	0	4	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0006	1655	9	9	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0007	1656	7	7	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0008	1657	6	0	1	5	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0009	1656	4	4	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0010	1656	3	0	0	3	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0011	1657	2	2	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0012	1659	2	2	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0013	1656	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0014	1656	1	0	1	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0015	1657	1	0	1	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0016	1659	1	0	0	1	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0017	1659	1	0	0	0	0	1	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0018	1655	1	0	0	0	0	1	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0019	1656	1	0	0	1	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0020	1656	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	t0021	1656	1	0	1	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRN1_chr3_3794431_3854834	0/0	t0001	3809	91	12	11	61	0	7	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0002	3807	65	9	4	48	1	3	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/1	t0003	3809	65	10	15	26	6	7	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0004	3809	23	0	11	2	3	7	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0005	3805	14	0	4	8	0	2	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0006	3807	12	0	2	6	3	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0007	3808	10	2	4	4	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0008	3805	8	0	4	4	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0009	3808	7	0	1	6	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0010	3809	6	6	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0011	3805	6	2	4	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0012	3804	6	6	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0013	3809	5	0	0	5	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	1/0	t0014	3810	5	4	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0015	3808	5	0	2	3	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0016	3807	5	5	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0017	3809	5	3	2	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0018	3807	4	1	0	3	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0019	3808	3	0	0	3	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0020	3810	3	1	0	2	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0021	3808	3	3	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0022	3796	2	2	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0023	3809	2	0	0	2	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0024	3807	2	2	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0025	3806	2	0	0	2	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0026	3809	2	1	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834