JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRN1_chr3_3794431_3854834	0/0	t0027	3810	2	0	1	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0028	3809	2	2	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0029	3808	2	2	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0030	3809	2	0	2	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0031	3807	2	2	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0032	3807	2	1	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0033	3798	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0034	3809	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0035	3809	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0036	3809	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0037	3809	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0038	3809	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0039	3809	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0040	3810	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0041	3807	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0042	3807	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0043	3807	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0044	3807	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0045	3807	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0046	3808	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0047	3808	1	0	1	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0048	3809	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0049	3805	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0050	3806	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0051	3807	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0052	3805	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0053	3809	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0054	3809	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0055	3810	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0056	3807	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0057	3810	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0058	3808	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0059	3808	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0060	3809	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0061	3809	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0062	3809	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0063	3808	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0064	3809	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0065	3809	1	0	0	0	1	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0066	3809	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0067	3809	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0068	3807	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0069	3808	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0070	3809	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0071	3804	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0072	3805	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0073	3806	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0074	3806	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0075	3806	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0076	3807	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834