Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOLD1_chr12_12780659_12796466	0/0	t0021	3846	2	1	0	1	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0022	3844	2	0	0	1	0	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0023	3848	2	0	1	0	0	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0024	3849	2	0	0	2	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0025	3846	2	2	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0026	3846	2	1	1	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0027	3852	1	0	0	1	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0028	3853	1	0	0	1	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0029	3850	1	0	0	1	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0030	3850	1	0	1	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0031	3851	1	0	1	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0032	3850	1	0	0	0	0	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0033	3850	1	0	0	0	0	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0034	3846	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0035	3845	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0036	3846	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0037	3846	1	0	0	0	0	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0038	3847	1	0	1	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0039	3843	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0040	3843	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0041	3842	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0042	3843	1	0	0	1	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0043	3843	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0044	3843	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0045	3843	1	0	1	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0046	3846	1	0	0	0	1	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0047	3843	1	0	0	1	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0048	3848	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0049	3846	1	0	0	0	0	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0050	3846	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0051	3846	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0052	3847	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0053	3848	1	0	0	1	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0054	3846	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	t0055	3846	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOM_chr6_31650894_31663210	0/1	t0001	195	416	90	80	179	18	48	copy fasta	APOM	chr6	31650894	31663210
APOM_chr6_31650894_31663210	0/0	t0002	195	2	2	0	0	0	0	copy fasta	APOM	chr6	31650894	31663210
APOM_chr6_31650894_31663210	0/0	t0003	195	1	0	0	1	0	0	copy fasta	APOM	chr6	31650894	31663210
APOOL_chrX_84998877_85098315	0/0	t0001	5537	37	0	6	24	1	6	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0002	5538	26	0	9	13	1	3	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0003	5536	15	2	1	11	0	1	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0004	5823	9	7	2	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0005	5539	9	0	4	3	1	1	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0006	5823	5	3	2	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0007	5538	5	0	0	5	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0008	5540	5	5	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0009	5526	4	4	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0010	5535	4	4	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0011	5525	3	3	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0012	5536	3	0	1	0	0	2	copy fasta	APOOL	chrX	84998877	85098315