JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRN1_chr3_3794431_3854834	0/0	t0077	3809	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0078	3808	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0079	3809	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0080	3809	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	t0081	3805	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN2_chr1_204612170_204690738	1/1	t0001	1327	172	70	23	61	6	10	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0002	1327	70	3	16	32	7	12	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0003	1327	63	2	7	42	3	9	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0004	1327	10	0	3	7	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0005	1327	4	4	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0006	1327	2	2	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0007	1327	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0008	1327	1	0	1	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0009	1327	1	0	0	0	0	1	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0010	1327	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0011	1327	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0012	1327	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	t0013	1327	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN3_chr7_111086127_111130454	1/1	t0001	1374	202	54	46	69	8	23	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0002	1375	37	7	3	23	0	4	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0003	1373	17	12	1	1	2	1	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0004	1374	4	4	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0005	1374	3	0	3	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0006	1373	2	2	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0007	1374	1	0	1	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0008	1374	1	1	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0009	1374	1	1	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0010	1375	1	1	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	t0011	1374	1	0	0	1	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN4CL_chr11_62681406_62694530	0/1	t0001	1496	208	42	46	84	9	26	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	1/0	t0002	1496	106	20	20	56	1	8	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	t0003	1496	18	15	3	0	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	t0004	1496	4	4	0	0	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	t0005	1496	3	3	0	0	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	t0006	1496	3	2	1	0	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	t0007	1496	2	2	0	0	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	t0008	1496	2	2	0	0	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	t0009	1496	1	1	0	0	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	t0010	1496	1	1	0	0	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4_chr20_6035546_6059060	1/0	t0001	713	198	57	30	85	7	18	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/1	t0002	713	172	17	38	100	3	13	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	t0003	713	5	5	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	t0004	713	5	0	4	0	0	1	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	t0005	713	4	4	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	t0006	713	4	4	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	t0007	713	4	4	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	t0008	713	3	3	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	t0009	713	2	0	0	0	0	2	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	t0010	713	2	0	0	1	0	1	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	t0011	713	2	0	2	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060