JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRTM2_chr12_1815565_1841753	0/0	t0049	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0050	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0051	2541	1	1	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0052	2541	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0053	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0054	2541	1	1	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0055	2541	1	1	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0056	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0057	2541	1	0	0	0	0	1	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0058	2541	1	0	0	0	0	1	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0059	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRWD1_chr7_102459984_102478168	1/0	t0001	217	241	47	43	117	4	29	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/1	t0002	216	168	32	35	67	14	19	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	t0003	217	6	6	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	t0004	217	5	5	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	t0005	217	3	3	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	t0006	216	3	1	2	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LRWD1_chr7_102459984_102478168	0/0	t0007	217	2	2	0	0	0	0	copy fasta	LRWD1	chr7	102459984	102478168
LSAMP_chr3_115797374_116450487	0/0	t0001	8400	12	4	4	2	1	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0002	8400	5	3	1	0	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0003	8388	3	3	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0004	8415	2	2	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0005	8390	2	2	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0006	8400	2	1	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0007	8408	2	2	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0008	8384	2	0	0	2	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0009	8404	2	1	0	0	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0010	8400	2	0	1	0	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0011	8401	2	2	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0012	8405	2	0	2	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0013	8401	2	0	0	2	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0014	8404	2	0	1	1	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0015	8388	2	0	2	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0016	8396	2	0	0	1	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0017	8404	2	2	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0018	8400	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0019	8400	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0020	8409	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0021	8390	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0022	8386	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0023	8399	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0024	8388	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0025	8403	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0026	8404	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0027	8395	1	0	0	1	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0028	8400	1	0	0	1	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0029	8400	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0030	8400	1	0	0	0	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0031	8399	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0032	8396	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487