JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSAMP_chr3_115797374_116450487	0/0	t0033	8404	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0034	8404	1	0	0	1	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0035	8408	1	0	0	1	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0036	8400	1	0	0	0	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0037	8395	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0038	8391	1	0	0	1	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0039	8388	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0040	8400	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0041	8396	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0042	8396	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0043	8401	1	0	0	0	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0044	8396	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0045	8401	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0046	8405	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0047	8389	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0048	8397	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0049	8365	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0050	8401	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0051	8397	1	0	0	0	1	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0052	8401	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0053	8401	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0054	8405	1	0	0	1	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0055	8409	1	0	0	1	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0056	8397	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0057	8401	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0058	8401	1	0	0	0	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0059	8404	1	0	0	0	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0060	8401	1	0	0	1	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0061	8425	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0062	8407	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0063	8400	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0064	8404	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0065	8409	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0066	8400	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0067	8440	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0068	8444	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0069	8433	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0070	8396	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0071	8404	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0072	8400	1	0	1	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	t0073	8389	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSG1_chr3_194635791_194677191	0/0	t0001	1307	50	6	11	27	0	6	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0002	1307	38	1	11	22	1	3	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0003	1307	33	3	5	18	2	5	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0004	1307	16	4	1	10	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/1	t0005	1307	14	0	0	12	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0006	1307	14	4	4	3	1	2	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0007	1307	14	1	6	7	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0008	1307	13	0	0	13	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0009	1307	13	0	1	12	0	0	copy fasta	LSG1	chr3	194635791	194677191