JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSG1_chr3_194635791_194677191	0/0	t0010	1307	11	5	6	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0011	1307	9	0	0	9	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0012	1307	9	6	0	0	0	3	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0013	1307	8	5	1	0	0	2	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0014	1307	8	6	2	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0015	1307	8	0	1	6	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0016	1307	7	0	0	7	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0017	1307	7	0	0	7	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0018	1307	6	6	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0019	1307	6	0	5	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0020	1307	5	5	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0021	1307	5	5	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0022	1307	4	0	1	3	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0023	1307	4	3	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0024	1307	4	2	0	1	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0025	1307	4	0	0	1	0	3	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0026	1307	4	2	0	0	1	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0027	1307	4	0	2	2	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0028	1307	4	0	2	0	0	2	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	1/0	t0029	1307	3	1	0	0	1	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0030	1307	3	3	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0031	1307	3	0	1	0	0	2	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0032	1307	3	0	0	3	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0033	1307	3	3	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0034	1307	3	0	2	0	1	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0035	1307	2	0	0	2	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0036	1307	2	0	0	2	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0037	1307	2	2	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0038	1307	2	0	2	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0039	1307	2	0	1	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0040	1307	2	1	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0041	1307	2	2	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0042	1307	2	1	0	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0043	1307	2	1	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0044	1628	2	2	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0045	1307	2	0	2	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0046	1307	2	0	2	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0047	1307	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0048	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0049	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0050	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0051	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0052	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0053	1307	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0054	1307	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0055	1307	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0056	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0057	1307	1	0	0	0	1	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0058	1307	1	0	0	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0059	1307	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191