JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSG1_chr3_194635791_194677191	0/0	t0060	1307	1	0	0	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0061	1307	1	0	0	0	1	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0062	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0063	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0064	1307	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0065	1307	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0066	1307	1	0	0	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0067	1307	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0068	1307	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0069	1307	1	0	0	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0070	1307	1	0	0	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0071	1307	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0072	1307	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0073	1307	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0074	1307	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0075	1307	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0076	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0077	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0078	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0079	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0080	1628	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0081	1629	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0082	1629	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0083	1628	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0084	1628	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0085	1307	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0086	1307	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0087	1307	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0088	1307	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0089	1307	1	0	0	0	1	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	t0090	1307	1	0	0	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSM10_chr1_36388436_36402908	1/1	t0001	489	346	80	61	165	13	25	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	t0002	489	71	7	8	26	5	25	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	t0003	489	7	6	1	0	0	0	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	t0004	489	4	0	4	0	0	0	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	t0005	489	3	3	0	0	0	0	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	t0006	489	1	0	0	1	0	0	copy fasta	LSM10	chr1	36388436	36402908
LSM11_chr5_157738712_157765709	0/0	t0001	5485	119	17	22	60	5	15	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	1/0	t0002	5485	96	14	34	36	1	10	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0003	5485	44	1	6	31	0	6	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/1	t0004	5484	38	5	3	20	2	7	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0005	5485	18	4	7	1	2	4	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0006	5485	18	6	4	0	4	4	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0007	5490	10	0	0	10	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0008	5485	9	9	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0009	5487	8	7	1	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0010	5485	8	1	1	6	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0011	5485	6	3	3	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0012	5485	5	0	0	5	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0013	5485	3	0	0	3	0	0	copy fasta	LSM11	chr5	157738712	157765709