JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSM11_chr5_157738712_157765709	0/0	t0014	5485	3	1	2	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0015	5485	3	2	1	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0016	5485	3	3	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0017	5485	3	3	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0018	5485	2	2	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0019	5484	2	2	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0020	5484	2	2	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0021	5485	2	0	0	2	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0022	5485	2	2	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0023	5485	2	2	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0024	5485	2	0	0	2	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0025	5485	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0026	5485	1	0	0	0	0	1	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0027	5485	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0028	5484	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0029	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0030	5485	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0031	5487	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0032	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0033	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0034	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0035	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0036	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0037	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0038	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0039	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0040	5485	1	0	1	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0041	5487	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0042	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0043	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0044	5485	1	0	0	0	0	1	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0045	5485	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	t0046	5485	1	0	1	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM12_chr17_44029328_44071671	0/1	t0001	1966	191	38	37	94	4	17	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0002	1967	48	22	12	8	2	4	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0003	1965	23	12	5	3	1	2	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0004	1966	7	0	6	0	1	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0005	1964	7	0	0	7	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0006	1966	4	3	1	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0007	1966	4	4	0	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0008	1966	4	4	0	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0009	1962	3	3	0	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	1/0	t0010	1965	1	0	0	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0011	1966	1	1	0	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0012	1967	1	0	1	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0013	1967	1	0	0	0	0	1	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0014	1967	1	1	0	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0015	1944	1	0	0	1	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	t0016	1966	1	0	0	1	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM14A_chr19_34167504_34234288	0/0	t0001	2040	70	3	17	44	2	4	copy fasta	LSM14A	chr19	34167504	34234288