JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSM14A_chr19_34167504_34234288	0/1	t0002	2037	50	19	16	0	5	9	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0003	2042	31	9	7	7	2	6	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0004	2035	17	14	2	0	0	1	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0005	2038	15	0	4	5	3	3	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0006	2044	15	4	2	2	2	5	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0007	2034	12	0	12	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0008	2062	10	0	1	9	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0009	2058	9	1	3	3	2	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0010	2036	7	4	0	2	0	1	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0011	2038	7	6	0	1	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0012	2034	6	5	0	0	0	1	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0013	2036	6	6	0	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0014	2046	6	3	2	0	0	1	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0015	2040	6	4	1	0	0	1	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0016	2060	5	1	1	3	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0017	2064	5	0	0	5	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0018	2039	4	1	2	0	0	1	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0019	2056	4	1	1	2	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0020	2046	4	1	0	0	0	3	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0021	2052	3	0	1	0	2	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0022	2042	3	3	0	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0023	2066	3	0	0	3	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0024	2052	2	2	0	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0025	2044	2	2	0	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0026	2063	1	0	0	0	0	1	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0027	2024	1	1	0	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0028	2033	1	0	0	0	0	1	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0029	2026	1	1	0	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0030	2040	1	0	0	1	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0031	2048	1	0	0	1	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0032	2043	1	0	1	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0033	2054	1	0	1	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0034	2050	1	1	0	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0035	2049	1	1	0	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0036	2066	1	0	0	1	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0037	2068	1	0	0	1	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	t0038	2050	1	1	0	0	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14B_chr20_62117475_62140374	0/1	t0001	1418	174	19	43	83	8	20	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	1/0	t0002	1419	86	29	19	26	0	11	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0003	1419	26	9	4	13	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0004	1420	20	16	1	0	0	3	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0005	1419	13	10	3	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0006	1419	3	3	0	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0007	1417	3	1	2	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0008	1418	2	0	0	2	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0009	1418	2	0	0	2	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0010	1419	1	1	0	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0011	1418	1	0	0	1	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0012	1418	1	0	0	0	0	1	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0013	1418	1	0	1	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374