JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSM14B_chr20_62117475_62140374	0/0	t0014	1418	1	0	0	1	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0015	1419	1	0	0	1	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0016	1418	1	0	1	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0017	1418	1	0	0	1	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0018	1420	1	0	0	0	0	1	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0019	1419	1	0	1	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	t0020	1418	1	0	1	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM1_chr8_38158339_38181493	1/1	t0001	505	288	67	50	123	10	36	copy fasta	LSM1	chr8	38158339	38181493
LSM1_chr8_38158339_38181493	0/0	t0002	506	84	6	13	57	6	2	copy fasta	LSM1	chr8	38158339	38181493
LSM1_chr8_38158339_38181493	0/0	t0003	505	20	16	4	0	0	0	copy fasta	LSM1	chr8	38158339	38181493
LSM1_chr8_38158339_38181493	0/0	t0004	507	4	0	1	3	0	0	copy fasta	LSM1	chr8	38158339	38181493
LSM1_chr8_38158339_38181493	0/0	t0005	506	3	0	3	0	0	0	copy fasta	LSM1	chr8	38158339	38181493
LSM1_chr8_38158339_38181493	0/0	t0006	505	1	0	1	0	0	0	copy fasta	LSM1	chr8	38158339	38181493
LSM1_chr8_38158339_38181493	0/0	t0007	506	1	0	0	1	0	0	copy fasta	LSM1	chr8	38158339	38181493
LSM1_chr8_38158339_38181493	0/0	t0008	505	1	1	0	0	0	0	copy fasta	LSM1	chr8	38158339	38181493
LSM2_chr6_31792396_31811966	0/1	t0001	571	423	94	84	186	18	40	copy fasta	LSM2	chr6	31792396	31811966
LSM2_chr6_31792396_31811966	0/0	t0002	571	1	1	0	0	0	0	copy fasta	LSM2	chr6	31792396	31811966
LSM2_chr6_31792396_31811966	0/0	t0003	571	1	0	1	0	0	0	copy fasta	LSM2	chr6	31792396	31811966
LSM2_chr6_31792396_31811966	0/0	t0004	571	1	0	1	0	0	0	copy fasta	LSM2	chr6	31792396	31811966
LSM2_chr6_31792396_31811966	0/0	t0005	571	1	1	0	0	0	0	copy fasta	LSM2	chr6	31792396	31811966
LSM3_chr3_14173817_14206122	0/0	t0001	3051	75	8	12	46	3	6	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0002	3051	75	6	5	61	0	3	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/1	t0003	3051	55	17	15	4	5	13	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0004	3051	39	0	8	30	0	1	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0005	3051	22	2	14	0	3	3	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	1/0	t0006	3051	19	8	5	1	1	3	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0007	3052	11	2	1	3	0	5	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0008	3051	6	0	0	6	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0009	3051	6	6	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0010	3051	6	0	0	6	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0011	3048	6	6	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0012	3051	5	0	2	0	2	1	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0013	3051	5	5	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0014	3051	5	5	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0015	3051	5	5	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0016	3051	4	4	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0017	3051	4	0	4	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0018	3048	4	3	1	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0019	3052	3	0	3	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0020	3050	3	3	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0021	3052	2	2	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0022	3052	2	0	0	0	2	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0023	3052	2	2	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0024	3051	2	2	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0025	3051	2	2	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0026	3051	2	2	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0027	3050	2	0	0	2	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0028	3051	2	0	2	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0029	3051	2	0	0	0	0	2	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0030	3051	1	0	0	1	0	0	copy fasta	LSM3	chr3	14173817	14206122