JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSM3_chr3_14173817_14206122	0/0	t0031	3048	1	1	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0032	3051	1	0	0	0	0	1	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0033	3051	1	0	0	0	0	1	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0034	3052	1	0	0	0	0	1	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0035	3052	1	0	0	1	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0036	3052	1	1	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0037	3052	1	0	0	1	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0038	3051	1	0	0	1	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0039	3051	1	0	0	1	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0040	3051	1	0	0	1	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0041	3051	1	1	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0042	3051	1	1	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0043	3051	1	0	0	0	0	1	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0044	3051	1	0	0	0	0	1	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0045	3051	1	0	0	1	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0046	3051	1	0	0	1	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0047	3050	1	0	0	1	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0048	3052	1	1	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	t0049	3051	1	1	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM4_chr19_18301236_18328076	0/0	t0001	1285	242	37	42	122	10	31	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0002	1285	73	31	9	26	2	5	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	1/1	t0003	1285	29	0	5	15	2	5	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0004	1285	21	13	3	0	2	3	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0005	1285	10	8	2	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0006	1285	2	0	2	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0007	1285	2	2	0	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0008	1285	1	1	0	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0009	1285	1	0	1	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0010	1285	1	0	1	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0011	1285	1	1	0	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0012	1285	1	0	0	1	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0013	1285	1	0	0	1	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0014	1285	1	0	0	1	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0015	1285	1	0	0	0	0	1	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0016	1285	1	1	0	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0017	1285	1	1	0	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0018	1285	1	0	0	1	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0019	1285	1	0	0	0	0	1	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0020	1285	1	0	0	1	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0021	1285	1	0	1	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	t0022	1285	1	1	0	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM5_chr7_32480338_32495380	0/1	t0001	1937	220	30	29	127	9	24	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0002	1937	78	2	19	47	2	8	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	1/0	t0003	1939	73	25	15	19	3	10	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0004	1937	28	24	2	2	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0005	1940	9	4	1	2	0	2	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0006	1938	8	3	2	0	2	1	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0007	1937	4	1	3	0	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0008	1937	3	3	0	0	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0009	1939	3	3	0	0	0	0	copy fasta	LSM5	chr7	32480338	32495380