JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSM5_chr7_32480338_32495380	0/0	t0010	1937	3	0	0	0	0	3	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0011	1939	3	0	0	3	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0012	1938	3	0	3	0	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0013	1938	1	0	0	1	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0014	1937	1	0	0	1	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0015	1937	1	0	0	1	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0016	1937	1	1	0	0	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0017	1939	1	1	0	0	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0018	1938	1	0	0	0	0	1	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0019	1939	1	1	0	0	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0020	1938	1	0	0	0	0	1	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	t0021	1937	1	0	0	1	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM6_chr4_146170718_146196535	0/1	t0001	1984	235	38	41	119	7	29	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0002	1984	38	0	6	21	5	6	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0003	1984	26	0	1	24	0	1	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0004	1984	14	12	2	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0005	1984	13	7	5	0	1	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	1/0	t0006	1984	11	0	8	0	1	1	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0007	1984	8	8	0	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0008	1984	7	5	2	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0009	1984	3	2	1	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0010	1984	3	3	0	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0011	1984	3	1	0	0	1	1	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0012	1984	2	0	0	2	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0013	1984	2	0	0	2	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0014	1984	2	0	0	0	1	1	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0015	1984	2	0	0	0	1	1	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0016	1984	1	0	0	0	1	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0017	1984	1	0	0	1	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0018	1984	1	0	0	1	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0019	1984	1	1	0	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0020	1984	1	1	0	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0021	1984	1	1	0	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	t0022	1984	1	1	0	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM7_chr19_2316521_2333586	1/1	t0001	180	422	86	77	196	14	47	copy fasta	LSM7	chr19	2316521	2333586
LSM7_chr19_2316521_2333586	0/0	t0002	180	13	12	1	0	0	0	copy fasta	LSM7	chr19	2316521	2333586
LSM7_chr19_2316521_2333586	0/0	t0003	162	1	0	0	0	0	1	copy fasta	LSM7	chr19	2316521	2333586
LSM8_chr7_118179164_118209035	0/0	t0001	12086	52	5	10	25	2	10	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0002	12098	26	0	8	16	0	2	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0003	12094	25	9	1	8	0	7	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0004	12083	20	0	0	17	0	3	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0005	12086	18	0	3	14	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	1/1	t0006	12094	17	1	4	9	1	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0007	12077	13	0	1	12	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0008	12098	12	0	4	8	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0009	12095	12	1	4	3	3	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0010	12098	11	2	2	5	1	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0011	12094	10	9	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0012	12102	10	0	2	6	1	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0013	12094	9	0	0	9	0	0	copy fasta	LSM8	chr7	118179164	118209035