JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSM8_chr7_118179164_118209035	0/0	t0064	12082	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0065	12086	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0066	12087	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0067	12086	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0068	12086	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0069	12094	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0070	12090	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0071	12087	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0072	12094	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0073	12094	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0074	12094	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0075	12102	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0076	12102	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0077	12102	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0078	12098	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0079	12094	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0080	12094	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0081	12094	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0082	12094	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0083	12090	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0084	12102	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0085	12099	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0086	12095	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0087	12087	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0088	12093	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0089	12089	1	0	0	0	1	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0090	12077	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0091	12077	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0092	12077	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0093	12098	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0094	12087	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0095	12103	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0096	12094	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0097	12095	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0098	12093	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0099	12089	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0100	12083	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0101	12102	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0102	12098	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0103	12098	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0104	12094	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0105	12099	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0106	12095	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0107	12106	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0108	12102	1	1	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0109	12102	1	0	0	0	1	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0110	12103	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0111	12134	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0112	12098	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0113	12099	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035