JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSM8_chr7_118179164_118209035	0/0	t0114	12094	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0115	12095	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0116	12082	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0117	12098	1	0	1	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0118	12101	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0119	12103	1	0	0	0	0	1	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0120	12098	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	t0121	12094	1	0	0	1	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSMEM1_chr7_112475991_112496062	1/0	t0001	1475	161	8	17	118	3	14	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0002	1471	62	15	9	23	1	14	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0003	1475	44	8	13	13	4	6	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0004	1471	42	7	24	1	6	4	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0005	1475	29	19	8	2	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/1	t0006	1471	11	2	1	4	1	2	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0007	1475	10	7	0	0	3	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0008	1471	9	8	1	0	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0009	1471	7	7	0	0	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0010	1475	6	6	0	0	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0011	1471	6	0	3	0	0	3	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0012	1475	2	0	0	2	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0013	1475	2	1	0	0	0	1	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0014	1475	1	0	0	0	0	1	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0015	1475	1	0	0	1	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0016	1475	1	1	0	0	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0017	1475	1	0	0	1	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0018	1471	1	0	0	0	0	1	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0019	1471	1	1	0	0	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0020	1471	1	0	0	0	0	1	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0021	1471	1	0	1	0	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0022	1471	1	1	0	0	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0023	1471	1	0	0	1	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0024	1471	1	0	0	0	0	1	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0025	1471	1	0	1	0	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	t0026	1471	1	1	0	0	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM2_chr3_50274087_50293114	1/0	t0001	940	225	66	47	75	10	26	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	t0002	940	104	15	13	75	0	1	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/1	t0003	942	35	1	4	18	4	7	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	t0004	939	5	3	1	1	0	0	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	t0005	944	3	3	0	0	0	0	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	t0006	942	1	0	1	0	0	0	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	t0007	940	1	0	0	1	0	0	copy fasta	LSMEM2	chr3	50274087	50293114
LSP1_chr11_1848084_1897263	0/1	t0001	566	335	73	69	140	15	37	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	1/0	t0002	566	12	3	7	0	1	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	t0003	566	4	4	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	t0004	566	3	2	1	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	t0005	566	1	0	0	0	0	1	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	t0006	566	1	0	0	1	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	t0007	566	1	0	0	1	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	t0008	566	1	0	1	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	t0009	566	1	1	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263