JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LTB4R2_chr14_24305140_24317038	0/0	t0003	424	5	0	0	5	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	t0004	424	3	0	0	0	0	3	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	t0005	424	3	3	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	t0006	424	1	0	1	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R_chr14_24306502_24323036	0/1	t0001	1645	215	40	19	123	7	25	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0002	1645	90	14	18	37	6	15	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	1/0	t0003	1645	52	17	25	0	3	6	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0004	1636	45	9	5	31	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0005	1645	7	7	0	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0006	1643	6	5	1	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0007	1645	2	0	0	2	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0008	1645	2	0	0	2	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0009	1645	1	0	1	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0010	1645	1	0	0	0	0	1	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0011	1645	1	0	0	0	0	1	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0012	1645	1	0	1	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0013	1645	1	0	0	1	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0014	1645	1	0	1	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0015	1645	1	0	1	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0016	1645	1	0	0	1	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	t0017	1636	1	0	0	1	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTBP1_chr2_32941953_33404509	0/0	t0001	1337	33	18	9	4	0	2	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0002	1337	17	1	4	8	1	3	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/1	t0003	1337	13	0	3	6	0	3	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	1/0	t0004	1337	9	0	0	1	0	7	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0005	1337	8	3	4	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0006	1337	7	1	1	2	0	3	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0007	1337	6	3	2	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0008	1337	5	5	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0009	1337	5	2	2	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0010	1337	4	4	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0011	1337	4	4	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0012	1338	4	4	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0013	1337	3	2	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0014	1337	3	2	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0015	1337	3	0	2	0	1	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0016	1337	3	1	2	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0017	1337	3	1	2	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0018	1337	3	0	0	2	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0019	1337	2	2	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0020	1337	2	0	0	0	0	2	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0021	1337	2	0	1	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0022	1337	2	2	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0023	1337	2	0	2	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0024	1337	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0025	1337	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0026	1337	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0027	1337	1	0	0	0	1	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0028	1337	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0029	1337	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509