JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LTBP1_chr2_32941953_33404509	0/0	t0030	1337	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0031	1338	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0032	1337	1	0	0	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0033	1337	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0034	1337	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0035	1337	1	0	0	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0036	1337	1	0	0	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0037	1337	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0038	1337	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0039	1337	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0040	1337	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0041	1337	1	0	0	0	1	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0042	1337	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0043	1337	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	t0044	1337	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP2_chr14_74493183_74617237	0/0	t0001	2995	75	21	9	36	5	4	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0002	2995	70	12	22	21	5	10	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	1/1	t0003	2995	67	23	15	13	3	11	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0004	2995	21	3	2	16	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0005	2995	9	8	1	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0006	2995	8	0	3	4	0	1	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0007	2995	6	5	1	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0008	2995	5	0	4	0	1	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0009	2995	4	2	2	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0010	2995	3	3	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0011	2995	3	3	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0012	2995	2	0	0	2	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0013	2995	2	2	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0014	2995	1	0	1	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0015	2995	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0016	2995	1	0	0	0	0	1	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0017	2995	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0018	2995	1	0	0	0	0	1	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0019	2995	1	0	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	t0020	2995	1	0	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP3_chr11_65533559_65563359	1/1	t0001	922	291	76	34	138	12	29	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	t0002	922	19	17	2	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	t0003	922	2	0	0	2	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	t0004	922	1	1	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	t0005	922	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	t0006	922	1	0	0	0	0	1	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	t0007	922	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP4_chr19_40596369_40634818	1/0	t0001	288	253	70	52	90	10	30	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/1	t0002	288	74	15	11	37	2	8	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	t0003	288	9	9	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	t0004	288	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	t0005	288	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBR_chr12_6379162_6396566	0/1	t0001	827	342	77	50	167	7	40	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	1/0	t0002	827	60	2	20	28	4	5	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0003	827	12	0	1	5	3	3	copy fasta	LTBR	chr12	6379162	6396566