Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOOL_chrX_84998877_85098315	0/0	t0063	6076	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0064	6075	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0065	5951	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0066	5951	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0067	6319	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0068	6316	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0069	6134	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0070	6317	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0071	6156	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0072	6196	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0073	6193	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0074	6197	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0075	6198	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0076	6197	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0077	6134	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0078	6292	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0079	6164	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0080	6102	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0081	6160	1	0	0	0	0	1	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0082	6133	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0083	6186	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0084	6164	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0085	6165	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0086	6196	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0087	6227	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0088	6133	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0089	6162	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0090	6132	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0091	6196	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0092	6314	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0093	6282	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0094	6295	1	0	0	0	0	1	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0095	6196	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0096	6195	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0097	6196	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0098	6132	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0099	6133	1	0	0	0	1	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0100	6081	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0101	6110	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0102	6142	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0103	6103	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0104	6162	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0105	5976	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0106	5788	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0107	6317	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0108	6061	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0109	6071	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0110	6037	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0111	6006	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0112	6129	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315