JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LTBR_chr12_6379162_6396566	0/0	t0004	827	12	11	1	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0005	827	7	0	0	7	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0006	827	6	4	2	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0007	827	5	0	0	4	1	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0008	827	2	2	0	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0009	827	1	0	0	1	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0010	827	1	0	0	0	1	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0011	827	1	0	0	1	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0012	827	1	0	0	1	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0013	827	1	0	0	1	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	t0014	827	1	0	0	1	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTB_chr6_31575558_31587424	0/1	t0001	159	404	81	69	198	18	37	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	t0002	159	7	1	1	0	0	5	copy fasta	LTB	chr6	31575558	31587424
LTC4S_chr5_179788986_179801647	1/1	t0001	349	335	73	60	158	6	36	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	t0002	349	67	4	17	32	8	6	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	t0003	349	13	11	2	0	0	0	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	t0004	349	1	1	0	0	0	0	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	t0005	349	1	0	1	0	0	0	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	t0006	349	1	1	0	0	0	0	copy fasta	LTC4S	chr5	179788986	179801647
LTF_chr3_46430645_46469905	1/1	t0001	589	289	79	58	112	9	29	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	t0002	589	105	4	14	69	7	11	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	t0003	589	30	8	0	21	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	t0004	589	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	t0005	589	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	t0006	589	1	0	0	0	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	t0007	589	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTK_chr15_41498637_41518827	1/1	t0001	478	282	41	44	161	6	28	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	t0002	478	134	50	29	33	7	15	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	t0003	478	5	1	3	0	1	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	t0004	478	3	2	1	0	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	t0005	478	2	0	0	2	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	t0006	478	1	0	0	0	0	1	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	t0007	478	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	t0008	478	1	0	1	0	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	t0009	478	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTN1_chr21_28923144_28997877	0/1	t0001	2388	248	45	39	137	4	22	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	1/0	t0002	2377	94	9	25	39	6	14	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0003	2388	14	13	1	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0004	2389	10	5	0	5	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0005	2388	9	7	2	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0006	2377	5	4	1	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0007	2388	5	0	0	5	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0008	2377	4	3	1	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0009	2388	3	0	0	3	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0010	2377	3	3	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0011	2377	2	2	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0012	2388	2	0	2	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0013	2388	2	0	0	2	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0014	2377	1	0	1	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	t0015	2377	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877