JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LTN1_chr21_28923144_28997877	0/0	t0016	2388	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTO1_chr11_69660563_69680353	0/0	t0001	2071	131	11	29	69	6	16	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	1/1	t0002	2071	88	11	29	20	11	15	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0003	2071	18	11	1	5	0	1	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0004	2071	17	17	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0005	2071	16	15	1	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0006	2071	7	7	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0007	2071	7	3	2	0	0	2	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0008	2071	5	5	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0009	2071	4	4	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0010	2071	3	1	2	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0011	2071	3	2	1	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0012	2071	3	3	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0013	2071	3	3	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0014	2071	2	0	0	0	0	2	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0015	2071	2	1	1	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0016	2071	2	2	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0017	2071	1	0	0	1	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0018	2071	1	0	0	0	0	1	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0019	2071	1	0	1	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0020	2071	1	0	1	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0021	2071	1	0	0	0	0	1	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0022	2071	1	1	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0023	2071	1	1	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0024	2071	1	0	0	1	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0025	2071	1	0	0	0	1	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0026	2071	1	0	0	0	0	1	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0027	2071	1	0	0	1	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0028	2071	1	0	0	1	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0029	2071	1	0	0	1	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0030	2071	1	0	0	1	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	t0031	2071	1	0	0	0	0	1	copy fasta	LTO1	chr11	69660563	69680353
LTV1_chr6_143838338_143868812	0/0	t0001	426	398	79	68	199	6	46	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	t0002	426	8	8	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	t0003	426	2	2	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	t0004	426	2	2	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	t0005	426	1	0	0	1	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	t0006	426	1	1	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LUC7L2_chr7_139354894_139428454	1/1	t0001	1483	116	8	22	62	6	16	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	t0002	1483	79	11	15	42	3	8	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	t0003	1483	39	34	1	4	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	t0004	1483	37	27	3	0	3	4	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	t0005	1483	1	0	0	1	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	t0006	1483	1	1	0	0	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	t0007	1483	1	1	0	0	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	t0008	1483	1	0	0	1	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	t0009	1483	1	0	1	0	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L3_chr17_50714603_50761219	0/0	t0001	5689	109	4	32	54	3	16	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0002	5692	62	16	7	29	0	10	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0003	5689	33	1	4	26	2	0	copy fasta	LUC7L3	chr17	50714603	50761219