JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LUC7L3_chr17_50714603_50761219	0/1	t0004	5691	24	8	9	3	3	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0005	5690	14	1	4	7	0	2	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0006	5692	13	1	1	8	3	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0007	5693	11	3	3	3	0	2	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0008	5693	9	4	3	0	1	1	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0009	5693	9	7	2	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0010	5690	9	0	0	9	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0011	5689	8	0	1	7	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0012	5689	7	7	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0013	5693	7	5	2	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0014	5692	5	0	0	5	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0015	5692	5	0	0	5	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0016	5693	4	4	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0017	5692	3	0	0	3	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0018	5690	3	1	1	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0019	5689	3	3	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0020	5693	3	3	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0021	5691	3	2	1	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0022	5692	3	1	0	2	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0023	5690	2	0	1	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0024	5689	2	0	0	0	0	2	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0025	5689	2	2	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0026	5689	2	2	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0027	5691	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0028	5692	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0029	5693	1	0	1	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0030	5688	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0031	5689	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0032	5688	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	1/0	t0033	5689	1	0	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0034	5690	1	0	1	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0035	5690	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0036	5686	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0037	5689	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0038	5693	1	0	0	0	0	1	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0039	5693	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0040	5692	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0041	5692	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0042	5692	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0043	5691	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0044	5689	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0045	5690	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0046	5692	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0047	5690	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0048	5692	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0049	5692	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0050	5693	1	0	0	0	0	1	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0051	5692	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0052	5692	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0053	5692	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219