JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LUC7L3_chr17_50714603_50761219	0/0	t0054	5692	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0055	5692	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0056	5690	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0057	5692	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0058	5693	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0059	5693	1	0	1	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0060	5693	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0061	5693	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0062	5693	1	0	0	0	0	1	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	t0063	5692	1	0	0	1	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L_chr16_183990_234449	1/1	t0001	319	341	88	61	140	12	38	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	t0002	319	4	0	0	4	0	0	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	t0003	319	3	3	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	t0004	319	1	0	1	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	t0005	319	1	1	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUM_chr12_91097629_91116494	0/1	t0001	1655	265	66	54	108	8	28	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0002	1655	59	2	2	50	0	5	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0003	1655	12	11	1	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0004	1655	11	0	0	11	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	1/0	t0005	1655	8	6	1	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0006	1655	7	0	2	0	3	2	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0007	1655	6	5	1	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0008	1655	2	0	0	0	1	1	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0009	1655	1	0	0	1	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0010	1655	1	0	1	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0011	1655	1	0	0	1	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0012	1655	1	0	0	1	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0013	1655	1	1	0	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0014	1655	1	0	0	1	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0015	1655	1	1	0	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0016	1655	1	0	0	1	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0017	1629	1	1	0	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0018	1655	1	0	0	1	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0019	1655	1	1	0	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0020	1655	1	1	0	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0021	1655	1	1	0	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	t0022	1655	1	0	0	1	0	0	copy fasta	LUM	chr12	91097629	91116494
LURAP1L_chr9_12770020_12828060	1/0	t0001	1997	170	35	22	89	4	19	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0002	1997	114	32	9	61	4	8	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0003	1997	38	4	6	22	0	6	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/1	t0004	1997	35	1	24	0	3	6	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0005	1997	14	13	1	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0006	1997	6	0	0	6	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0007	1997	4	0	1	0	1	2	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0008	1997	4	0	0	4	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0009	1997	4	1	2	0	1	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0010	1997	4	0	3	0	0	1	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0011	1997	3	1	0	0	2	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0012	1997	3	0	3	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0013	1997	3	0	3	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060