JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LURAP1L_chr9_12770020_12828060	0/0	t0014	1997	2	2	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0015	1997	1	0	1	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0016	1997	1	1	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0017	1997	1	1	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0018	1997	1	1	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0019	1999	1	0	0	0	0	1	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0020	1999	1	0	0	0	0	1	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0021	1997	1	0	0	0	1	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0022	1999	1	0	1	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0023	1997	1	0	0	1	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0024	1997	1	0	0	1	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0025	1997	1	1	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0026	1997	1	0	0	1	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0027	1997	1	0	0	1	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	t0028	1997	1	1	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1_chr1_46198334_46226256	1/1	t0001	1130	308	74	64	115	14	39	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0002	1130	14	0	0	13	1	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0003	1130	11	0	0	11	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0004	1130	11	9	1	1	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0005	1130	5	2	0	2	0	1	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0006	1130	2	2	0	0	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0007	1130	1	1	0	0	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0008	1130	1	0	0	0	1	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0009	1130	1	0	0	1	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0010	1130	1	0	1	0	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	t0011	1130	1	0	0	1	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LUZP1_chr1_23079030_23173856	0/1	t0001	5183	134	23	21	79	1	9	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	1/0	t0002	5182	69	9	23	28	1	7	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0003	5182	18	16	2	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0004	5183	14	13	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0005	5182	12	0	0	12	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0006	5183	12	0	0	12	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0007	5183	10	0	4	0	2	4	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0008	5182	7	5	2	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0009	5177	6	6	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0010	5183	5	0	3	0	0	2	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0011	5184	3	0	0	0	0	3	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0012	5182	3	2	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0013	5183	3	3	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0014	5183	3	0	2	0	1	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0015	5182	2	0	0	2	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0016	5182	2	0	0	0	0	2	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0017	5182	2	2	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0018	5182	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0019	5182	1	0	0	1	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0020	5182	1	0	0	0	0	1	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0021	5182	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0022	5182	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0023	5183	1	0	0	0	0	1	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0024	5183	1	0	0	1	0	0	copy fasta	LUZP1	chr1	23079030	23173856