JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LUZP1_chr1_23079030_23173856	0/0	t0025	5183	1	0	0	0	1	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0026	5183	1	0	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0027	5183	1	0	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0028	5182	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0029	5183	1	0	0	1	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0030	5183	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0031	5183	1	0	0	0	0	1	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0032	5183	1	0	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0033	5182	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	t0034	5183	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP2_chr11_24492053_25087638	0/0	t0001	4176	18	1	5	7	1	4	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0002	4173	17	7	5	2	2	1	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0003	4170	10	9	1	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0004	4172	9	7	0	2	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0005	4172	6	4	1	0	1	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0006	4172	4	4	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0007	4179	4	0	0	4	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0008	4173	3	0	1	2	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0009	4176	3	3	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0010	4172	3	3	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0011	4174	3	1	0	1	0	1	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0012	4170	3	2	1	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0013	4178	3	3	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0014	4172	2	1	1	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0015	4173	2	2	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0016	4172	2	2	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0017	4170	2	0	0	0	0	2	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0018	4173	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0019	4178	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0020	4176	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0021	4170	1	0	1	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0022	4176	1	0	0	0	0	1	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0023	4175	1	0	0	0	0	1	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0024	4176	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0025	4176	1	0	0	0	0	1	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0026	4176	1	0	0	1	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0027	4176	1	0	0	1	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0028	4192	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0029	4172	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0030	4172	1	0	1	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0031	4173	1	0	1	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0032	4170	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0033	4173	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0034	4173	1	0	0	0	0	1	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0035	4178	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0036	4173	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0037	4173	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0038	4170	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	t0039	4172	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP4_chrX_115284715_115312563	0/1	t0001	805	231	56	37	109	6	22	copy fasta	LUZP4	chrX	115284715	115312563