JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LUZP4_chrX_115284715_115312563	1/0	t0002	805	33	13	7	11	0	1	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	t0003	805	11	0	1	2	3	5	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	t0004	805	1	1	0	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	t0005	804	1	0	0	1	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	t0006	805	1	0	0	1	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	t0007	805	1	1	0	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	t0008	805	1	1	0	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LVRN_chr5_115957475_116032606	0/1	t0001	1632	143	28	24	75	3	12	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0002	1632	99	22	24	35	6	12	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0003	1632	55	8	11	32	1	3	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0004	1632	38	7	3	19	1	8	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	1/0	t0005	1632	28	5	6	11	0	5	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0006	1632	20	0	1	15	0	4	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0007	1632	8	7	1	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0008	1632	5	5	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0009	1632	3	0	0	3	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0010	1632	3	3	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0011	1632	2	0	0	0	0	2	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0012	1632	2	0	1	0	1	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0013	1632	2	2	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0014	1632	2	0	2	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0015	1632	2	2	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0016	1632	1	0	0	1	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0017	1632	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0018	1632	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0019	1632	1	0	0	1	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0020	1632	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	t0021	1632	1	0	1	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LXN_chr3_158661414_158677648	1/1	t0001	403	254	27	40	137	11	37	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	t0002	403	156	67	23	48	7	11	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	t0003	403	13	1	0	12	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	t0004	403	2	1	1	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	t0005	403	1	0	0	1	0	0	copy fasta	LXN	chr3	158661414	158677648
LY6D_chr8_142779882_142791539	1/1	t0001	363	421	85	73	202	17	42	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	t0002	360	11	6	4	0	1	0	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	t0003	363	1	0	1	0	0	0	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	t0004	363	1	1	0	0	0	0	copy fasta	LY6D	chr8	142779882	142791539
LY6E_chr8_143013529_143027409	0/1	t0001	736	183	47	34	66	10	25	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	t0002	736	155	16	37	85	4	13	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	t0003	736	23	21	2	0	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	t0004	736	8	8	0	0	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	t0005	736	5	0	0	5	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	t0006	736	1	0	1	0	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	t0007	736	1	1	0	0	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	t0008	736	1	1	0	0	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6G5B_chr6_31664976_31678546	0/1	t0001	2240	115	1	21	74	5	13	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0002	2240	86	22	18	30	3	13	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0003	2240	59	6	17	32	1	3	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0004	2240	49	18	7	14	3	7	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0005	2240	30	13	4	11	1	1	copy fasta	LY6G5B	chr6	31664976	31678546