JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LY6G5B_chr6_31664976_31678546	0/0	t0006	2240	17	10	1	6	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0007	2240	8	2	3	1	2	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0008	2240	8	1	3	1	1	2	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0009	2240	5	0	1	4	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0010	2240	5	4	1	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0011	2240	4	4	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0012	2240	4	0	0	1	0	3	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0013	2240	4	1	0	3	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0014	2240	2	0	0	2	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0015	2240	2	0	2	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0016	2240	2	0	0	0	2	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0017	2240	2	2	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0018	1717	2	0	0	0	0	2	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0019	2240	1	0	0	1	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0020	2240	1	1	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0021	2240	1	1	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0022	2240	1	1	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0023	2240	1	0	0	1	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0024	2240	1	1	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0025	2240	1	0	0	0	0	1	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0026	2240	1	0	0	1	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0027	2240	1	1	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0028	2240	1	1	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	t0029	2240	1	0	0	0	0	1	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5C_chr6_31671684_31686067	0/1	t0001	968	237	34	47	113	11	31	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G5C_chr6_31671684_31686067	0/0	t0002	968	144	38	25	74	2	5	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G5C_chr6_31671684_31686067	0/0	t0003	968	34	18	5	5	3	3	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G5C_chr6_31671684_31686067	0/0	t0004	968	6	1	0	0	0	5	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G5C_chr6_31671684_31686067	0/0	t0005	968	1	0	1	0	0	0	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G5C_chr6_31671684_31686067	0/0	t0006	968	1	1	0	0	0	0	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G6C_chr6_31713648_31726746	0/1	t0001	516	253	49	53	108	15	27	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	t0002	516	127	39	29	44	3	12	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	t0003	516	13	1	0	12	0	0	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	t0004	516	4	0	0	1	0	3	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	t0005	516	1	0	0	1	0	0	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	t0006	516	1	1	0	0	0	0	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6D_chr6_31710348_31722919	0/1	t0001	124	351	90	74	132	17	37	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	t0002	124	49	2	6	33	1	7	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	t0003	124	1	0	0	1	0	0	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6F_chr6_31701866_31715679	0/1	t0001	130	425	94	78	188	18	46	copy fasta	LY6G6F	chr6	31701866	31715679
LY6H_chr8_143152916_143165321	0/1	t0001	457	242	30	55	117	8	31	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	t0002	457	176	49	27	76	8	16	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	t0003	457	20	19	1	0	0	0	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	t0004	457	1	0	0	1	0	0	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	t0005	457	1	0	0	0	0	1	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	t0006	457	1	0	0	0	0	1	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	t0007	457	1	0	1	0	0	0	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	t0008	457	1	0	0	0	0	1	copy fasta	LY6H	chr8	143152916	143165321
LY6K_chr8_142695111_142710127	1/1	t0001	2174	204	33	37	103	6	23	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0002	2174	119	23	23	52	6	15	copy fasta	LY6K	chr8	142695111	142710127