JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LY6K_chr8_142695111_142710127	0/0	t0003	2174	33	9	1	21	0	2	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0004	2174	9	3	0	6	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0005	2174	9	0	0	9	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0006	2174	9	0	0	9	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0007	2175	8	7	1	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0008	2174	6	5	1	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0009	2174	6	1	0	5	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0010	2174	3	0	1	0	1	1	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0011	2174	3	0	0	3	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0012	2174	2	0	1	1	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0013	2174	2	0	0	2	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0014	2174	1	0	0	1	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0015	2174	1	0	0	1	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0016	2174	1	1	0	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0017	2174	1	1	0	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0018	2174	1	0	0	0	0	1	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0019	2174	1	0	1	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0020	2174	1	0	1	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0021	2174	1	0	1	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0022	2174	1	0	0	0	1	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0023	2174	1	0	0	0	0	1	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0024	2174	1	0	0	1	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0025	2174	1	1	0	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	t0026	2174	1	0	0	0	0	1	copy fasta	LY6K	chr8	142695111	142710127
LY6L_chr8_143075630_143088486	0/1	t0001	884	181	15	49	87	7	22	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0002	944	97	2	8	77	1	9	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	1/0	t0003	884	67	31	12	11	4	8	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0004	884	29	7	2	16	0	4	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0005	854	7	1	4	0	2	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0006	944	5	4	1	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0007	854	5	5	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0008	884	5	5	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0009	944	5	4	1	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0010	884	4	4	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0011	944	3	0	0	3	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0012	795	3	3	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0013	854	3	3	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0014	944	3	3	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0015	884	2	2	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0016	884	2	0	1	0	0	1	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0017	854	1	0	0	1	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0018	884	1	1	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0019	884	1	0	0	1	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0020	943	1	0	1	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0021	884	1	0	1	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0022	854	1	1	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0023	884	1	0	0	1	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0024	825	1	1	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	t0025	944	1	0	0	1	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY75_chr2_159798355_159909756	0/0	t0001	1769	135	49	13	42	7	24	copy fasta	LY75	chr2	159798355	159909756