JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LY75_chr2_159798355_159909756	0/1	t0002	1769	103	3	35	57	3	4	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	1/0	t0003	1764	36	0	0	30	2	3	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0004	1769	34	3	6	25	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0005	1769	6	6	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0006	1769	4	4	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0007	1769	3	3	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0008	1769	3	3	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0009	1769	1	0	0	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0010	1769	1	1	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0011	1769	1	0	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0012	1769	1	0	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0013	1769	1	0	0	0	0	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	t0014	1769	1	0	0	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY86_chr6_6583720_6659982	1/1	t0001	371	410	95	72	178	18	45	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	t0002	371	7	0	0	7	0	0	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	t0003	371	3	0	0	3	0	0	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	t0004	371	2	2	0	0	0	0	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	t0005	371	1	0	0	0	0	1	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	t0006	371	1	1	0	0	0	0	copy fasta	LY86	chr6	6583720	6659982
LY96_chr8_73986392_74034079	1/1	t0001	77	283	54	63	120	14	30	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	t0002	77	28	27	1	0	0	0	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	t0003	26	3	3	0	0	0	0	copy fasta	LY96	chr8	73986392	74034079
LY9_chr1_160791174_160833255	0/0	t0001	454	253	53	37	122	11	30	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	1/1	t0002	454	120	24	23	57	5	9	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	t0003	454	12	11	1	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	t0004	454	4	3	1	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	t0005	454	3	3	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	t0006	454	1	0	0	0	0	1	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	t0007	454	1	0	0	1	0	0	copy fasta	LY9	chr1	160791174	160833255
LYAR_chr4_4262701_4295154	1/0	t0001	415	219	35	46	100	9	28	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	t0002	415	83	6	6	64	0	7	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	t0003	415	70	3	15	42	7	3	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	t0004	417	43	38	4	0	1	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/1	t0005	417	10	5	3	0	0	1	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	t0006	415	5	0	0	0	0	5	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	t0007	415	2	0	2	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	t0008	415	1	0	0	1	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	t0009	415	1	0	0	1	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	t0010	415	1	1	0	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	t0011	415	1	0	0	0	1	0	copy fasta	LYAR	chr4	4262701	4295154
LYG1_chr2_99279238_99306197	1/1	t0001	427	353	85	80	138	10	38	copy fasta	LYG1	chr2	99279238	99306197
LYG1_chr2_99279238_99306197	0/0	t0002	427	1	1	0	0	0	0	copy fasta	LYG1	chr2	99279238	99306197
LYG2_chr2_99237246_99260666	1/1	t0001	326	424	86	80	201	10	45	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	t0002	346	1	0	0	1	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	t0003	326	1	0	0	0	0	1	copy fasta	LYG2	chr2	99237246	99260666
LYL1_chr19_13094033_13107858	1/1	t0001	639	320	65	72	126	14	41	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	t0002	639	24	22	1	0	0	1	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	t0003	639	14	9	5	0	0	0	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	t0004	639	4	0	0	0	0	4	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	t0005	639	2	2	0	0	0	0	copy fasta	LYL1	chr19	13094033	13107858