Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABL2_chr1_179094330_179234677	0/0	t0014	8677	5	0	0	3	1	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0015	8667	5	1	3	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0016	8670	5	4	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0017	8678	5	1	2	1	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0018	8675	4	0	0	4	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0019	8679	4	0	1	3	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0020	8663	4	3	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0021	8670	4	3	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0022	8658	4	2	2	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0023	8661	3	0	0	3	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0024	8680	3	3	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0025	8663	3	0	0	3	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0026	8677	3	0	0	0	0	3	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0027	8666	3	3	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0028	8686	2	0	0	2	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0029	8674	2	0	0	2	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0030	8661	2	0	0	2	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0031	8679	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0032	8682	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0033	8676	2	0	0	2	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0034	8654	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0035	8665	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0036	8670	2	0	0	0	0	2	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0037	8665	2	1	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0038	8664	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0039	8663	2	0	2	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0040	8669	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0041	8668	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0042	8664	2	2	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0043	8668	2	0	0	0	0	2	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0044	8670	2	0	0	2	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0045	8661	2	0	0	2	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0046	8690	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0047	8689	1	0	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0048	8687	1	0	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0049	8686	1	0	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0050	8682	1	0	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0051	8680	1	0	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0052	8665	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0053	8669	1	0	0	0	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0054	8665	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0055	8654	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0056	8676	1	0	1	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0057	8689	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0058	8677	1	1	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0059	8669	1	1	0	0	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0060	8677	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0061	8676	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0062	8674	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0063	8676	1	0	0	0	0	1	copy fasta	ABL2	chr1	179094330	179234677