Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APOOL_chrX_84998877_85098315	0/0	t0113	6190	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0114	6065	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0115	6104	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0116	5910	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0117	6196	1	0	1	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0118	6291	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0119	6319	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0120	6314	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0121	6296	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	t0122	6318	1	0	0	1	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOO_chrX_23828353_23912938	0/0	t0001	526	100	19	11	56	3	11	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	1/1	t0002	526	79	3	24	39	3	8	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0003	526	69	38	10	12	3	6	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0004	526	7	3	2	2	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0005	526	7	6	1	0	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0006	527	1	0	0	1	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0007	527	1	0	0	1	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0008	527	1	0	0	1	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0009	527	1	0	1	0	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0010	526	1	1	0	0	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0011	526	1	0	0	0	0	1	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	t0012	530	1	0	0	1	0	0	copy fasta	APOO	chrX	23828353	23912938
APPBP2_chr17_60438158_60531242	0/0	t0001	4735	48	10	17	20	0	1	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0002	4735	17	0	3	13	0	1	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0003	4737	8	6	2	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0004	4736	7	5	2	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0005	4736	7	7	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0006	4736	6	6	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0007	4735	5	5	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0008	4735	3	2	1	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0009	4735	3	3	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0010	4734	3	3	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0011	4736	3	3	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0012	4735	3	3	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0013	4735	2	2	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0014	4735	2	2	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0015	4736	2	2	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0016	4735	2	2	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0017	4735	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0018	4735	1	0	1	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0019	4735	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0020	4735	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0021	4736	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0022	4735	1	0	0	1	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0023	4735	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0024	4736	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0025	4736	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0026	4735	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0027	4735	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0028	4736	1	0	1	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242