JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYNX1_chr8_142766202_142782202	0/0	t0049	4227	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0050	4227	1	1	0	0	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0051	4227	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0052	4227	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0053	4227	1	1	0	0	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0054	4227	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0055	4227	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0056	4227	1	1	0	0	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0057	4227	1	0	0	0	0	1	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0058	4227	1	1	0	0	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0059	4227	1	1	0	0	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0060	4227	1	1	0	0	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0061	4225	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0062	4225	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	t0063	4227	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYN_chr8_55874835_56019169	0/0	t0001	4334	93	22	21	34	9	7	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	1/0	t0002	4334	73	9	14	33	2	14	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/1	t0003	4329	14	1	5	0	3	4	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0004	4334	8	0	0	8	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0005	4338	8	7	1	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0006	4329	7	0	4	0	1	2	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0007	4332	5	4	1	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0008	4337	5	3	0	2	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0009	4333	5	0	0	5	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0010	4333	5	0	0	5	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0011	4334	4	4	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0012	4333	4	4	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0013	4335	3	0	0	2	0	1	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0014	4333	3	3	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0015	4332	3	3	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0016	4332	3	3	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0017	4332	3	3	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0018	4335	2	0	0	2	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0019	4329	2	0	0	0	0	2	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0020	4334	2	2	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0021	4334	2	0	2	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0022	4332	2	2	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0023	4334	1	0	0	0	0	1	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0024	4333	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0025	4334	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0026	4334	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0027	4334	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0028	4333	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0029	4335	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0030	4335	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0031	4334	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0032	4334	1	0	0	0	1	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0033	4334	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0034	4334	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0035	4332	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169