JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYN_chr8_55874835_56019169	0/0	t0036	4333	1	0	1	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0037	4334	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0038	4334	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0039	4335	1	0	1	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0040	4334	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0041	4334	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0042	4336	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0043	4335	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0044	4334	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0045	4334	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0046	4334	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0047	4334	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0048	4334	1	0	0	0	0	1	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0049	4337	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0050	4338	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0051	4332	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0052	4334	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0053	4334	1	0	0	1	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	t0054	4334	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYPD1_chr2_132638286_132675205	1/1	t0001	3033	137	12	17	88	5	13	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0002	3037	114	7	29	61	7	10	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0003	3038	14	13	1	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0004	3033	9	9	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0005	3033	7	6	1	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0006	3036	7	7	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0007	3032	7	7	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0008	3032	4	3	0	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0009	3037	4	4	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0010	3033	4	4	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0011	3033	3	3	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0012	3037	3	2	1	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0013	3037	3	2	1	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0014	3033	3	0	3	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0015	3033	3	0	1	0	0	2	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0016	3034	3	3	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0017	3033	2	2	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0018	3037	2	2	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0019	3037	2	0	1	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0020	3029	2	0	0	2	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0021	3038	2	2	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0022	3038	2	1	1	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0023	3037	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0024	3032	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0025	3033	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0026	3036	1	0	0	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0027	3036	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0028	3037	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0029	3033	1	0	0	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0030	3033	1	0	0	0	0	1	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0031	3033	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205