JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYPD1_chr2_132638286_132675205	0/0	t0032	3037	1	0	0	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0033	3037	1	0	0	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0034	3037	1	0	0	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0035	3037	1	0	0	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0036	3033	1	0	0	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0037	3034	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0038	3033	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	t0039	3038	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD2_chr8_142745150_142757532	1/1	t0001	215	395	95	66	178	16	38	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	t0002	215	1	1	0	0	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD3_chr19_43455787_43470608	0/1	t0001	602	205	67	29	71	12	25	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	1/0	t0002	602	161	29	34	81	3	13	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	t0003	602	77	0	13	56	0	8	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	t0004	602	3	0	0	2	0	1	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	t0005	602	1	0	0	0	0	1	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	t0006	602	1	0	0	0	1	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	t0007	602	1	1	0	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	t0008	602	1	1	0	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD4_chr19_41832074_41849683	1/0	t0001	1296	194	47	35	87	6	18	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/1	t0002	1292	146	6	26	79	10	24	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0003	1297	32	9	1	20	0	2	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0004	1293	19	3	2	14	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0005	1296	7	7	0	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0006	1295	7	2	1	3	1	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0007	1296	3	3	0	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0008	1296	3	0	2	0	1	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0009	1297	3	3	0	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0010	1292	3	0	0	3	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0011	1292	3	0	3	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0012	1296	2	2	0	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0013	1281	2	0	0	2	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0014	1297	2	0	2	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0015	1297	1	1	0	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	t0016	1292	1	1	0	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD5_chr19_43790927_43807447	0/0	t0001	1732	96	6	25	56	3	6	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/1	t0002	1713	94	8	27	32	5	21	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0003	1732	81	14	5	54	1	7	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0004	1732	67	12	17	35	1	2	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	1/0	t0005	1732	19	0	2	11	4	1	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0006	1713	16	16	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0007	1713	15	14	0	0	1	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0008	1732	9	8	1	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0009	1732	5	4	1	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0010	1732	3	2	0	0	0	1	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0011	1713	3	0	0	0	1	2	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0012	1724	3	0	0	3	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0013	1732	2	2	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0014	1732	2	0	2	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0015	1732	2	2	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0016	1732	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447