JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYPD5_chr19_43790927_43807447	0/0	t0017	1732	1	0	0	1	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0018	1732	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0019	1732	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0020	1732	1	0	0	1	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0021	1713	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0022	1713	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0023	1732	1	0	0	1	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0024	1568	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0025	1732	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	t0026	1732	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD6B_chr2_149033699_149220262	1/1	t0001	722	258	71	49	103	7	26	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6B_chr2_149033699_149220262	0/0	t0002	722	2	0	1	0	1	0	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6B_chr2_149033699_149220262	0/0	t0003	722	2	2	0	0	0	0	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6B_chr2_149033699_149220262	0/0	t0004	722	1	1	0	0	0	0	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6B_chr2_149033699_149220262	0/0	t0005	722	1	0	0	1	0	0	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6_chr2_149325587_149479138	0/0	t0001	3496	115	27	31	39	5	13	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0002	3496	43	16	6	12	0	9	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0003	3496	24	11	8	1	2	2	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0004	3496	12	12	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/1	t0005	3496	7	4	1	0	0	1	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0006	3496	5	2	1	0	1	1	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0007	3496	4	0	4	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0008	3496	3	3	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0009	3496	3	3	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0010	3496	2	1	1	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0011	3496	2	2	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0012	3496	1	1	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0013	3496	1	1	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0014	3496	1	1	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0015	3496	1	1	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0016	3496	1	0	1	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0017	3496	1	0	0	1	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0018	3496	1	1	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0019	3496	1	0	1	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	t0020	3496	1	0	0	1	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	1/0	t0021	3496	1	0	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD8_chr1_248734415_248760759	1/1	t0001	449	275	40	61	118	17	37	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	t0002	449	64	9	4	49	1	1	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	t0003	449	26	24	2	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	t0004	449	3	2	1	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	t0005	449	2	2	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	t0006	449	2	2	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	t0007	434	1	0	0	1	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	t0008	449	1	1	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPLA1_chr8_54041367_54106947	1/1	t0001	1823	249	47	45	116	10	29	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	t0002	1823	48	36	12	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	t0003	1823	2	2	0	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	t0004	1823	1	0	1	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	t0005	1823	1	1	0	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	t0006	1823	1	1	0	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947