JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYPLA1_chr8_54041367_54106947	0/0	t0007	1823	1	0	1	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	t0008	1823	1	0	0	0	0	1	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	t0009	1823	1	1	0	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	t0010	1823	1	0	1	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA2_chr1_23786145_23800539	0/1	t0001	940	319	77	68	133	15	25	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLA2_chr1_23786145_23800539	1/0	t0002	940	48	1	11	28	1	6	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLA2_chr1_23786145_23800539	0/0	t0003	940	9	7	2	0	0	0	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLA2_chr1_23786145_23800539	0/0	t0004	940	4	4	0	0	0	0	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLA2_chr1_23786145_23800539	0/0	t0005	928	1	0	1	0	0	0	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLA2_chr1_23786145_23800539	0/0	t0006	940	1	0	0	1	0	0	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLA2_chr1_23786145_23800539	0/0	t0007	940	1	0	0	0	0	1	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLA2_chr1_23786145_23800539	0/0	t0008	940	1	1	0	0	0	0	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLAL1_chr1_219168878_219217858	1/0	t0001	1144	275	60	45	134	9	26	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/1	t0002	1144	76	27	17	17	8	6	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	t0003	1144	4	4	0	0	0	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	t0004	1144	1	0	0	1	0	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	t0005	1144	1	1	0	0	0	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	t0006	1144	1	0	0	0	1	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYRM1_chr16_20895771_20930006	1/1	t0001	1010	371	90	62	162	16	39	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	t0002	1010	4	0	0	4	0	0	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	t0003	1010	2	2	0	0	0	0	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	t0004	1010	1	1	0	0	0	0	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	t0005	1010	1	0	0	1	0	0	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	t0006	1010	1	0	0	1	0	0	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	t0007	1010	1	0	0	0	0	1	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	t0008	1010	1	1	0	0	0	0	copy fasta	LYRM1	chr16	20895771	20930006
LYRM2_chr6_89627224_89643747	0/0	t0001	5086	228	43	33	133	7	12	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/1	t0002	5086	27	9	4	3	2	8	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0003	5089	24	0	6	9	2	7	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0004	5086	24	3	6	8	4	3	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	1/0	t0005	5081	14	2	6	0	3	2	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0006	5091	13	2	2	4	0	5	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0007	5087	11	1	3	7	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0008	5081	9	9	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0009	5085	6	0	0	5	0	1	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0010	5088	4	4	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0011	5086	3	0	0	3	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0012	5088	3	0	0	3	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0013	5080	3	3	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0014	5084	3	1	2	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0015	5086	2	0	0	1	0	1	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0016	5086	2	0	0	2	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0017	5088	2	0	2	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0018	5087	2	1	1	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0019	5086	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0020	5087	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0021	5089	1	0	0	0	0	1	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0022	5086	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0023	5086	1	0	0	1	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0024	5086	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747