JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYRM2_chr6_89627224_89643747	0/0	t0025	5086	1	0	0	1	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0026	5086	1	0	0	1	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0027	5087	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0028	5086	1	0	1	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0029	5091	1	0	0	1	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0030	5081	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0031	5081	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	t0032	5086	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM4_chr6_5103419_5265950	0/1	t0001	1222	98	7	18	54	7	11	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0002	1222	38	10	4	11	5	8	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0003	1222	30	7	3	19	0	1	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0004	1222	28	14	12	0	0	2	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0005	1222	24	17	4	3	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0006	1222	19	1	6	11	0	1	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	1/0	t0007	1222	11	0	2	3	0	5	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0008	1222	11	9	1	0	1	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0009	1223	6	6	0	0	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0010	1224	5	4	1	0	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0011	1222	3	0	0	3	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0012	1222	2	0	0	2	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0013	1222	2	2	0	0	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0014	1222	2	2	0	0	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0015	1222	2	2	0	0	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0016	1222	1	0	0	0	1	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0017	1224	1	0	1	0	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0018	1224	1	1	0	0	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0019	1222	1	1	0	0	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	t0020	1223	1	1	0	0	0	0	copy fasta	LYRM4	chr6	5103419	5265950
LYRM7_chr5_131165944_131210428	1/1	t0001	5905	55	6	10	24	3	10	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0002	5903	28	5	5	14	2	2	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0003	5888	27	21	6	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0004	5907	21	3	5	9	1	3	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0005	5909	18	0	3	11	2	2	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0006	5909	10	0	7	3	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0007	5905	9	8	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0008	5907	8	2	3	3	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0009	5907	7	0	0	6	0	1	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0010	5911	7	1	1	2	1	2	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0011	5909	6	0	1	1	1	3	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0012	5905	6	0	6	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0013	5901	6	1	2	3	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0014	5888	5	5	0	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0015	5900	5	4	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0016	5908	5	5	0	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0017	5911	3	1	1	0	0	1	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0018	5899	3	0	0	3	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0019	5905	3	0	1	2	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0020	5904	3	1	1	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0021	5907	3	3	0	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0022	5912	3	3	0	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428