JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
LYRM7_chr5_131165944_131210428	0/0	t0023	5909	3	0	0	3	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0024	5904	2	0	0	2	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0025	5891	2	2	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0026	5890	2	2	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0027	5911	2	0	2	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0028	5914	2	2	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0029	5907	2	2	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0030	5907	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0031	5905	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0032	5888	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0033	5929	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0034	5929	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0035	5917	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0036	5919	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0037	5917	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0038	5906	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0039	5888	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0040	5903	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0041	5901	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0042	5903	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0043	5915	1	0	0	0	1	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0044	5895	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0045	5885	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0046	5905	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0047	5904	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0048	5888	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0049	5888	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0050	5885	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0051	5888	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0052	5888	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0053	5902	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0054	5907	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0055	5900	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0056	5904	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0057	5905	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0058	5909	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0059	5891	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0060	5908	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0061	5909	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0062	5914	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0063	5909	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0064	5903	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0065	5912	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0066	5907	1	0	1	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0067	5919	1	0	0	0	1	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0068	5909	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0069	5903	1	0	0	0	1	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0070	5919	1	0	0	1	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0071	5888	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	t0072	5914	1	1	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428