JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYRM7_chr5_131165944_131210428	0/0	t0073	5899	1	0	0	0	0	1	copy fasta	LYRM7	chr5	131165944	131210428
LYRM9_chr17_27873358_27898365	0/1	t0001	1183	196	45	44	71	11	24	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	1/0	t0002	1183	98	0	17	67	6	7	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0003	1183	74	30	6	33	1	4	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0004	1183	9	8	1	0	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0005	1183	3	0	0	0	0	3	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0006	1183	3	3	0	0	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0007	1183	2	0	0	2	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0008	1183	1	1	0	0	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0009	1183	1	0	0	1	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0010	1183	1	1	0	0	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0011	1183	1	1	0	0	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0012	1183	1	0	1	0	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0013	1183	1	0	0	0	0	1	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0014	1183	1	0	1	0	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0015	1183	1	0	0	0	0	1	copy fasta	LYRM9	chr17	27873358	27898365
LYRM9_chr17_27873358_27898365	0/0	t0016	1183	1	1	0	0	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYSET_chr14_93180317_93193463	0/1	t0001	1882	306	54	71	129	13	38	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0002	1882	87	16	7	52	5	7	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0003	1879	6	0	0	6	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0004	1882	5	5	0	0	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0005	1882	4	3	1	0	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0006	1880	4	4	0	0	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0007	1882	3	2	1	0	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0008	1882	3	0	0	3	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0009	1882	2	2	0	0	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0010	1882	2	0	0	2	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0011	1882	2	0	0	2	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0012	1879	1	0	0	1	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0013	1882	1	0	0	0	0	1	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0014	1882	1	0	0	1	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0015	1882	1	0	0	1	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	t0016	1882	1	0	0	1	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSMD1_chr1_151154748_151170902	1/0	t0001	1779	36	17	5	9	4	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0002	1813	24	1	11	10	1	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0003	1814	21	0	4	12	1	4	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0004	1799	18	3	4	9	1	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0005	1815	17	0	3	9	1	4	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0006	1791	16	7	6	3	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0007	1798	15	0	6	6	3	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0008	1812	14	0	3	8	2	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0009	1789	13	1	4	7	1	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/1	t0010	1805	13	5	3	2	2	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0011	1792	10	6	0	3	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0012	1792	8	8	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0013	1787	8	0	0	7	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0014	1793	8	4	1	3	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0015	1788	7	0	3	3	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0016	1790	7	2	2	2	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0017	1793	7	7	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902