JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYSMD1_chr1_151154748_151170902	0/0	t0018	1806	7	3	3	1	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0019	1817	7	0	2	4	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0020	1794	5	2	1	1	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0021	1800	5	1	0	4	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0022	1804	5	0	2	2	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0023	1795	4	1	0	3	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0024	1796	4	0	0	4	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0025	1816	4	0	1	2	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0026	1794	4	4	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0027	1797	3	0	1	1	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0028	1801	3	1	0	0	1	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0029	1802	3	0	0	1	0	2	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0030	1807	3	1	1	0	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0031	1811	3	0	0	1	0	2	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0032	1818	3	0	0	1	0	2	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0033	1779	3	0	0	0	1	2	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0034	1792	2	2	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0035	1793	2	2	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0036	1779	2	2	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0037	1791	2	2	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0038	1794	2	2	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0039	1812	2	0	0	0	0	2	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0040	1820	2	0	0	1	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0041	1792	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0042	1794	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0043	1811	1	0	0	0	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0044	1794	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0045	1796	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0046	1792	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0047	1812	1	0	1	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0048	1813	1	0	1	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0049	1791	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0050	1793	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0051	1779	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0052	1799	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0053	1799	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0054	1803	1	0	0	0	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0055	1809	1	0	0	1	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0056	1810	1	0	0	1	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0057	1814	1	0	1	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0058	1819	1	0	0	0	0	1	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0059	1822	1	0	0	1	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0060	1790	1	0	1	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0061	1798	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	t0062	1787	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD2_chr15_51718011_51742655	1/1	t0001	630	398	82	78	177	18	41	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	t0002	631	25	7	0	17	0	1	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	t0003	630	10	9	1	0	0	0	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	t0004	630	1	0	1	0	0	0	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD3_chr5_90510626_90534584	0/0	t0001	3342	135	26	36	57	5	11	copy fasta	LYSMD3	chr5	90510626	90534584